SNP Profiles of AMAZ 12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	TT	GG	GG	GG	TT	GG	TT	AA	GG	CT	TT	GG	CT
1._RUQ_334	_	_	GG	_	_	_	_	TT	_	_	CT	_	GG	_
2._AMAZ_12	_	_	GG	_	_	_	_	TT	_	_	TT	_	GG	_
3._RUQ_334b	AT	TT	GG	GG	AG	TT	GG	TT	AA	GG	TT	CT	GG	CC
4._RUQ_334	_	_	GG	_	_	_	_	TT	_	_	_	_	_	_
5._RUQ_334	_	_	CC	_	_	_	_	AA	_	_	_	_	GG	_
6._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
7._GC-05-158-4-11	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
8._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	_	_	AG	_
9._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
10._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
11._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
12._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
13._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
14._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
15._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
16._AMAZ_12	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
17._GC-05-158-4-11	_	_	CG	_	_	_	_	GT	_	_	_	_	AG	_
18._GC-05-158-4-11	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
19._GC-05-158-4-11	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
20._GC-05-158-4-11	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
21._GC-05-010-1-10	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
22._GC-05-010-1-10	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
23._GC-05-010-1-10	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
24._GC-05-010-1-10	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_
25._GC-05-010-1-10	_	_	CG	_	_	_	_	GT	_	_	TT	_	AG	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CT	CT	AG	CC	GG	GG	TT	AA	AC	TT	CT	AG	GG
1._RUQ_334	_	_	_	AG	_	_	CG	_	_	_	_	_	_	GG
2._AMAZ_12	_	_	_	AG	_	_	CG	_	_	_	_	_	_	GG
3._RUQ_334b	AA	CC	CC	AG	CG	GG	CG	CT	AA	CC	TT	CT	AG	GG
4._RUQ_334	_	_	CC	AG	_	-	CG	_	_	CC	_	_	AG	GG
5._RUQ_334	_	_	_	AG	_	GG	CG	CG	_	CC	_	_	AG	CC
6._AMAZ_12	_	_	_	AG	_	_	GG	_	_	_	_	_	_	GT
7._GC-05-158-4-11	_	_	CC	AG	_	AG	GG	CG	_	CC	_	_	AG	GT
8._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
9._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
10._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
11._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
12._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
13._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
14._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
15._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
16._AMAZ_12	_	_	_	AA	_	_	GG	_	_	_	_	_	_	GT
17._GC-05-158-4-11	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
18._GC-05-158-4-11	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
19._GC-05-158-4-11	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
20._GC-05-158-4-11	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
21._GC-05-010-1-10	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
22._GC-05-010-1-10	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
23._GC-05-010-1-10	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
24._GC-05-010-1-10	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT
25._GC-05-010-1-10	_	_	CC	AA	_	AG	GG	CG	_	CC	_	_	AG	GT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CG	AA	CC	AA	TT	TT	AA	AT	GG	AA	AC	CC	AA
1._RUQ_334	_	_	AA	_	_	_	_	AA	_	GG	_	CC	_	_
2._AMAZ_12	_	_	AA	_	_	_	_	AA	_	GG	_	CC	_	_
3._RUQ_334b	TT	CG	AA	CC	AA	TT	CT	AA	AT	GG	AG	CC	CC	AA
4._RUQ_334	TT	_	_	_	_	_	CT	AA	_	CG	_	CC	_	_
5._RUQ_334	_	_	_	_	_	_	AG	AA	_	CG	_	CC	_	_
6._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
7._GC-05-158-4-11	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
8._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
9._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
10._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
11._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
12._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
13._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
14._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
15._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
16._AMAZ_12	_	_	AA	_	_	_	_	AC	_	CC	_	AC	_	_
17._GC-05-158-4-11	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
18._GC-05-158-4-11	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
19._GC-05-158-4-11	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
20._GC-05-158-4-11	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
21._GC-05-010-1-10	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
22._GC-05-010-1-10	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
23._GC-05-010-1-10	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
24._GC-05-010-1-10	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_
25._GC-05-010-1-10	CT	_	AA	_	_	_	CC	AC	_	CC	_	AC	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AC	GG	AA	TT	GG	GT	GG	CC	AC	AT	GG	GG	CC
1._RUQ_334	_	_	_	_	_	GG	_	_	_	AC	_	_	_	_
2._AMAZ_12	_	_	_	_	_	GG	_	_	_	AC	_	_	_	_
3._RUQ_334b	CC	AC	GG	AA	TT	GG	TT	AG	CT	AC	AT	GG	GG	CC
4._RUQ_334	_	_	GG	_	_	GG	_	_	_	AC	_	_	_	_
5._RUQ_334	_	_	GG	_	_	GG	_	_	_	AC	_	_	_	_
6._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
7._GC-05-158-4-11	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
8._AMAZ_12	_	_	_	_	_	AA	_	_	_	_	_	_	_	_
9._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
10._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
11._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
12._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
13._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
14._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
15._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
16._AMAZ_12	_	_	_	_	_	AA	_	_	_	CC	_	_	_	_
17._GC-05-158-4-11	_	_	AG	_	_	AA	_	_	_	_	_	_	_	_
18._GC-05-158-4-11	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
19._GC-05-158-4-11	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
20._GC-05-158-4-11	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
21._GC-05-010-1-10	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
22._GC-05-010-1-10	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
23._GC-05-010-1-10	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
24._GC-05-010-1-10	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_
25._GC-05-010-1-10	_	_	AG	_	_	AA	_	_	_	CC	_	_	_	_

	57	58	59
_Input profile	CT	AC	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_334	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_334b	TT	AA	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_334	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_334	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-05-158-4-11	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._AMAZ_12	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-05-158-4-11	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-05-158-4-11	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-05-158-4-11	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-05-158-4-11	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-05-010-1-10	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-05-010-1-10	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-05-010-1-10	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._GC-05-010-1-10	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
25._GC-05-010-1-10	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: AMAZ_12 RUQ_334

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._AMAZ_12 RUQ_334

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._AMAZ_12

88.5 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B B94 T2

Dapeng Zhang, 2016

3._AMAZ_12 RUQ_334b

83.1 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._AMAZ_12 RUQ_334

78.1 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._AMAZ_12 RUQ_334

58.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

6._AMAZ_12

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

7._AMAZ_12 GC-05-158-4-11

54.8 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._AMAZ_12

54.5 %
11 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

9._AMAZ_12

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

10._AMAZ_12

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._AMAZ_12

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

12._AMAZ_12

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

13._AMAZ_12

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

14._AMAZ_12

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

15._AMAZ_12

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

16._AMAZ_12

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

17._AMAZ_12 GC-05-158-4-11

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._AMAZ_12 GC-05-158-4-11

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

19._AMAZ_12 GC-05-158-4-11

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

20._AMAZ_12 GC-05-158-4-11

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

21._AMAZ_12 GC-05-010-1-10

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

22._AMAZ_12 GC-05-010-1-10

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

23._AMAZ_12 GC-05-010-1-10

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

24._AMAZ_12 GC-05-010-1-10

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

25._AMAZ_12 GC-05-010-1-10

52.4 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13